rs6286963 SNP Detail

Summary

• ID
  rs6286963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146606449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATTGATAAGT
  ATAAAATACA TANCATTTTG GATAACTCAA AAAGAAAACT TTTTTTCAGG CCTATCTACT
  TCTACAAATT tgtaatccta gctactttgg aagatgagac aagagaattg agagttcaag
  gcctgcctgg gcaactaang agccttgttt taaaatacaa aCTACAAAGC AGGCAGTGGG
  TGTATGCTCA GTGGTGGAAC ATTTGCACAC GGGAGGCTTT CTGGCCAAGC TCCGGGACCT
  Y
  CACTCCCCCC CCCCCCAAAA CAAATGCCTT ACACTTATCA GTGCCATCAG GTTACAGATC
  ACAATAGGCA GCAGAATCCT AGCAAGTGCA AGAGAACCAG AGGACATGCT GTGGACTCAG
  AGATTCAGGT GCTGCCTCAA AACAGTGGCT AGAAAGAAGT CAGGAATCAC TGTCTGTGAT
  GACATAGGGG ACTGGTACAC CNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8692844	WI_WGS_3_147437170	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6286963					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146606449 () rs orientation: forward

Symbol	Name	Function Class
Rr587102	regulatory region 587102	383 bp distal
Tssr1089	transcription start site region 1089	1182 bp downstream
Tssr32371	transcription start site region 32371	1502 bp downstream
Ttll7	tubulin tyrosine ligase-like family, member 7	Intron