rs6286456 SNP Detail

Summary

• ID
  rs6286456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146606347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATAATA TTTTAAAAAA
  TCATTCTTCA TTTTCATTTT TATTGGGAAT TGATTGATAA GTATAAAATA CATAGCATTT
  TGGATAACTC AAAAAGAAAA CTTTTTTTCA GGCCTATCTA CTTCTACAAA TTTGTAATCC
  TAGCTACTTT GGAAGATGAG ACAAGAGAAT TGAGAGTTCA AGGCCTGCCT GGGCAACTAA
  Y
  GAGCCTTGTT TTAAAATACA AACTACAAAG CAGGCAGTGG GTGTATGCTC AGTGGTGGAA
  CATTTGCACA CGGGAGGCTT TCTGGCCAAG CTCCGGGACC TCCACTCCCC CCCCCCCCAA
  AACAAATGCC TTACACTTAT CAGTGCCATC AGGTTACAGA TCACAATAGG CAGCAGAATC
  CTAGCAAGTG CAAGAGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss8692335	WI_WGS_3_147437068	WI	MOUSE	f	SNP							T		C
ss61097364	NES16605567	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs6286456					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097364	NES16605567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146606347 () rs orientation: forward

Symbol	Name	Function Class
Rr587102	regulatory region 587102	281 bp distal
Tssr1089	transcription start site region 1089	1080 bp downstream
Tssr32371	transcription start site region 32371	1400 bp downstream
Ttll7	tubulin tyrosine ligase-like family, member 7	Intron