rs6286271 SNP Detail

Summary

• ID
  rs6286271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132638811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGTACGC ATGCATGTGT
  GTTGTATGCA TGAGTATGGG GGTATGCATG CCAGTGTAAG CACACGCAGA GACCAGAAGA
  GGACACTGGG TGTCTTCCTG TATTGCTCTT TACCCGACTG CCTTGAGATG GAATCTCTTA
  CTGAACAGAA ACTGGTCCCT TGGGTGAGGC TGGCTGGCCA GCACAGTCCC TCCTGGGACC
  R
  CACCGCCTCC TAAAGATGCT GGACTTACAG GAATCTGCCA TCAAGCATGG CTTCTTGTTT
  TGATGGGTGC TGAGGATTCA AGCCCAGGTC CTCCTGCGTG GACTCACCCA CCCATCTATC
  TCCCGGCCCA GATCCTCCTG CGTGGACTTC TCCCACTGAG CTATCTCCCG GCCCAGGTTT
  GCTAGCTTTT TTCCCGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8692149	WI_WGS_3_133415406	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6286271					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132638811 () rs orientation: forward

Symbol	Name	Function Class
Npnt	nephronectin	Intron
Rr585483	regulatory region 585483	111 bp distal