rs6285786 SNP Detail

Summary

• ID
  rs6285786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132638752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACTACA TTCGTTTGCT
  GGATTTTTGG TTTGTTGTTT ATATGTGATT TCTGTGCATG CATGTACGCA TGCATGTGTG
  TTGTATGCAT GAGTATGGGG GTATGCATGC CAGTGTAAGC ACACGCAGAG ACCAGAAGAG
  GACACTGGGT GTCTTCCTGT ATTGCTCTTT ACCCGACTGC CTTGAGATGG AATCTCTTAC
  Y
  GAACAGAAAC TGGTCCCTTG GGTGAGGCTG GCTGGCCAGC ACAGTCCCTC CTGGGACCGC
  ACCGCCTCCT AAAGATGCTG GACTTACAGG AATCTGCCAT CAAGCATGGC TTCTTGTTTT
  GATGGGTGCT GAGGATTCAA GCCCAGGTCC TCCTGCGTGG ACTCACCCAC CCATCTATCT
  CCCGGCCCAG ATCCTCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8691664	WI_WGS_3_133415347	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6285786					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132638752 () rs orientation: forward

Symbol	Name	Function Class
Npnt	nephronectin	Intron
Rr585483	regulatory region 585483	52 bp distal