rs6285274 SNP Detail

Summary

• ID
  rs6285274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132638682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGTTGA CTCAATCAAA
  GCAATAATTT AGCCATCCAC CCAGAATGAT TACAAAGTAT TATGAAAGGC AAACACTACA
  TTCGTTTGCT GGATTTTTGG TTTGTTGTTT ATATGTGATT TCTGTGCATG CATGTACGCA
  TGCATGTGTG TTGTATGCAT GAGTATGGGG GTATGCATGC CAGTGTAAGC ACACGCAGAG
  R
  CCAGAAGAGG ACACTGGGTG TCTTCCTGTA TTGCTCTTTA CCCGACTGCC TTGAGATGGA
  ATCTCTTACT GAACAGAAAC TGGTCCCTTG GGTGAGGCTG GCTGGCCAGC ACAGTCCCTC
  CTGGGACCGC ACCGCCTCCT AAAGATGCTG GACTTACAGG AATCTGCCAT CAAGCATGGC
  TTCTTGTTTT GATGGGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8691152	WI_WGS_3_133415277	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6285274					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132638682 () rs orientation: forward

Symbol	Name	Function Class
Npnt	nephronectin	Intron
Rr585483	regulatory region 585483	within coordinates