rs6284278 SNP Detail

Summary

• ID
  rs6284278
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132638487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCAGTGC TGGACCAGTC
  TAGAGTCCTG GGGTGGGAGA AGAGATGGCT TGATTACATC TCTCTTTGGA TGAATGCCTT
  CCCTCTTTAA AACACAAAAC ATCCACTTTA ACATATGATC GCTTTGTGTA TTTGTCTAAT
  TTAAGGGAGT CTTTTGGGGG GTGGGGGTGG GGGTAACAGA AGAAGAGTTT GCAGGGCTGA
  K
  TTGACTCAAT CAAAGCAATA ATTTAGCCAT CCACCCAGAA TGATTACAAA GTATTATGAA
  AGGCAAACAC TACATTCGTT TGCTGGATTT TTGGTTTGTT GTTTATATGT GATTTCTGTG
  CATGCATGTA CGCATGCATG TGTGTTGTAT GCATGAGTAT GGGGGTATGC ATGCCAGTGT
  AAGCACACGC AGAGACCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8690150	WI_WGS_3_133415082	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6284278					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132638487 () rs orientation: forward

Symbol	Name	Function Class
Npnt	nephronectin	Intron
Rr585483	regulatory region 585483	192 bp proximal