rs6282663 SNP Detail

Summary

• ID
  rs6282663
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108177542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATCTTGAT GAGAAAGAGA AAGCCATAGG CTCTCTCTAG
  TTCTGGGCAA GTAACTCAAA CATCTAGAGT CATTTCTTGG TGATCTTCAC AGATTCCTAA
  W
  TACAAGTGCA ATTCCTTTGT TCATAGAAGG CAAAGCACAG TTGAGTCTTG AATGTTAGCT
  TCCATCAGAG GTATCTGAAA TGCTGCTAAA ACACAAATT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8688527	WI_WGS_6_109039969	WI	MOUSE	f	SNP		A	T
ss45936026	mCV23136121	ABI	CRAMUS_MOUSE	f	SNP	A	A		T
ss133497265	ENSMUSSNP5589121	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6282663					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108177542 () rs orientation: forward

Symbol	Name	Function Class
Rr636050	regulatory region 636050	1394 bp distal