rs6281195 SNP Detail

Summary

• ID
  rs6281195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90757567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGAGTT TTAATCCCCA
  GGCCACACGG ACACAGCTCT GTGTTTGTGT CTCACTTATC TCAGCTTCAC GAAGGGCTGT
  ACTGTTTTTT TTTTTTTGGG GGTGGGGGTG GGGGTGGGGC TGAGATTAAC AACAGTATAA
  TGCTCCACCC TCATTCTAAG ACTCAAGCAC AGGTGTTCCT GGGCACACAG GGCATTCGGT
  Y
  CTGGAGGGAC ACACATAACC TAAGAGACAA AAGTCTCTCC AGCTGTATGT ACTGTGTGTG
  CTGAGACCCT GATGCAAGCA CCTACAGCTC ATGTGGCTGG AGTAATCAGA TGCAGGACGG
  GCCTCACTGC TTGGCACTCC CCCAAGTATG GAGACTTCCT TTCTATAGTG GCTGTGGGAC
  CCTCAGCATC CTCTTCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8687051	WI_WGS_6_91529136	WI	MOUSE	f	SNP							T		C
ss51360241	NES13739273	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6281195					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51360241	NES13739273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90757567 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr1762	regulatory region 1762	within coordinates
Rr634323	regulatory region 634323	1350 bp distal
Tssr62048	transcription start site region 62048	697 bp downstream
Tssr62049	transcription start site region 62049	1439 bp downstream
Tssr62050	transcription start site region 62050	1452 bp downstream
Tssr62051	transcription start site region 62051	1925 bp downstream