rs6280930 SNP Detail

Summary

• ID
  rs6280930
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:53458641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTATGTGG TATTCAGAGT
  ATAATTCTTA TCCTAAAATC ACTTTTTGTT TGCAGTTACA ACATACAATA GCATAAACGA
  TAGTATCCTG TAATTGGAGA CATTTCTAAC TGTACCTGTC ATGTGTTAGC TGTTACTGGA
  ATTTTTTCCA ATTGATTTAA CCTTGGCTGC ATAAATTTAA AACATGGCCA GGTTCCAAAA
  R
  TCTTTCACCA TTAAGTATTG TAGTTCAAAT TGTGCACGTG CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACAGC AGAGCAATCA GTACCTTTCT AAAGTAAACA
  TTCAAAAAAT TAAGTTAAAT GCCTCAATTT ATTTTAGTAT TTTAAATTCA GAATGGCAGT
  GTATATTAAT GTTTGGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8686785	WI_WGS_8_52234597	WI	MOUSE	f	SNP							G		A
ss60613044	NES16309445	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6280930					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60613044	NES16309445	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:53458641 () rs orientation: forward

Symbol	Name	Function Class
D8Mit230	DNA segment, Chr 8, Massachusetts Institute of Technology 230	within coordinates
Gm23666	predicted gene, 23666	802 bp upstream