rs6280904 SNP Detail

Summary

• ID
  rs6280904
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72927830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTAATT GCATTTAGAA
  TGACTGATCG TAAGCATTGA GTTTCTTTTC TCTGATCTGC AGTTGCCTCA ACTCAAACTT
  AAGTTTAATG GGAGTTAGGA AGTCTGCTAC ACGATTAGTG CGTTTTCACC AGAGGACACT
  GCCTGTGTGT GCAGCAGGCT GAGCACATCA GCAGGTGTTA AGGAGCACAG CCGAGAGCTT
  K
  GTTTTTCCTA ACAGTCATCT ACGGTTTTAT TGATTGAGAT GCAGTGGTCT GGTTTGGTGT
  GGGTTTCACT TCGATTTTCT ATTCTTCACA GTGGAGAAAA ATAAAGATTT TTAAAGTAAC
  TTTCAAGTTG AATTATCAAA GGTTTAAAAA AGATAAAAAG CCCCCCAAAA TTCAGCTCAT
  CTAAACATAT AAAAATTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8686759	WI_WGS_2_73923788	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6280904					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72927830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559097	regulatory region 559097			1857 bp distal
Rr559098	regulatory region 559098			804 bp distal