rs6280900 SNP Detail

Summary

• ID
  rs6280900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72927828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAACTAA TTGCATTTAG
  AATGACTGAT CGTAAGCATT GAGTTTCTTT TCTCTGATCT GCAGTTGCCT CAACTCAAAC
  TTAAGTTTAA TGGGAGTTAG GAAGTCTGCT ACACGATTAG TGCGTTTTCA CCAGAGGACA
  CTGCCTGTGT GTGCAGCAGG CTGAGCACAT CAGCAGGTGT TAAGGAGCAC AGCCGAGAGC
  Y
  TTGTTTTTCC TAACAGTCAT CTACGGTTTT ATTGATTGAG ATGCAGTGGT CTGGTTTGGT
  GTGGGTTTCA CTTCGATTTT CTATTCTTCA CAGTGGAGAA AAATAAAGAT TTTTAAAGTA
  ACTTTCAAGT TGAATTATCA AAGGTTTAAA AAAGATAAAA AGCCCCCCAA AATTCAGCTC
  ATCTAAACAT ATAAAAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8686755	WI_WGS_2_73923786	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6280900					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72927828 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559097	regulatory region 559097			1855 bp distal
Rr559098	regulatory region 559098			802 bp distal