rs6280836 SNP Detail

Summary

• ID
  rs6280836
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72927789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGAGGAG CCTTCGTTCC
  TTTCTTTGAA AAGGACCAGA GAAAACTAAT TGCATTTAGA ATGACTGATC GTAAGCATTG
  AGTTTCTTTT CTCTGATCTG CAGTTGCCTC AACTCAAACT TAAGTTTAAT GGGAGTTAGG
  AAGTCTGCTA CACGATTAGT GCGTTTTCAC CAGAGGACAC TGCCTGTGTG TGCAGCAGGC
  K
  GAGCACATCA GCAGGTGTTA AGGAGCACAG CCGAGAGCTT TGTTTTTCCT AACAGTCATC
  TACGGTTTTA TTGATTGAGA TGCAGTGGTC TGGTTTGGTG TGGGTTTCAC TTCGATTTTC
  TATTCTTCAC AGTGGAGAAA AATAAAGATT TTTAAAGTAA CTTTCAAGTT GAATTATCAA
  AGGTTTAAAA AAGATAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8686691	WI_WGS_2_73923747	WI	MOUSE	f	SNP							T		G
ss38117840	NES09277705	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		G		T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6280836					SNP	T	T	T	T	T	T	T	G	G	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117840	NES09277705	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72927789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559097	regulatory region 559097			1816 bp distal
Rr559098	regulatory region 559098			763 bp distal