rs6280823 SNP Detail

Summary

• ID
  rs6280823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72927777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTCCTG CAGCCTGAGG
  AGCCTTCGTT CCTTTCTTTG AAAAGGACCA GAGAAAACTA ATTGCATTTA GAATGACTGA
  TCGTAAGCAT TGAGTTTCTT TTCTCTGATC TGCAGTTGCC TCAACTCAAA CTTAAGTTTA
  ATGGGAGTTA GGAAGTCTGC TACACGATTA GTGCGTTTTC ACCAGAGGAC ACTGCCTGTG
  Y
  GTGCAGCAGG CTGAGCACAT CAGCAGGTGT TAAGGAGCAC AGCCGAGAGC TTTGTTTTTC
  CTAACAGTCA TCTACGGTTT TATTGATTGA GATGCAGTGG TCTGGTTTGG TGTGGGTTTC
  ACTTCGATTT TCTATTCTTC ACAGTGGAGA AAAATAAAGA TTTTTAAAGT AACTTTCAAG
  TTGAATTATC AAAGGTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8686678	WI_WGS_2_73923735	WI	MOUSE	f	SNP							T		C
ss38117841	NES09277704	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6280823					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117841	NES09277704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72927777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559097	regulatory region 559097			1804 bp distal
Rr559098	regulatory region 559098			751 bp distal