rs6280785 SNP Detail

Summary

• ID
  rs6280785
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72927758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCGAAA TCTGTGTGAA
  TCTTTCCTGC AGCCTGAGGA GCCTTCGTTC CTTTCTTTGA AAAGGACCAG AGAAAACTAA
  TTGCATTTAG AATGACTGAT CGTAAGCATT GAGTTTCTTT TCTCTGATCT GCAGTTGCCT
  CAACTCAAAC TTAAGTTTAA TGGGAGTTAG GAAGTCTGCT ACACGATTAG TGCGTTTTCA
  S
  CAGAGGACAC TGCCTGTGTG TGCAGCAGGC TGAGCACATC AGCAGGTGTT AAGGAGCACA
  GCCGAGAGCT TTGTTTTTCC TAACAGTCAT CTACGGTTTT ATTGATTGAG ATGCAGTGGT
  CTGGTTTGGT GTGGGTTTCA CTTCGATTTT CTATTCTTCA CAGTGGAGAA AAATAAAGAT
  TTTTAAAGTA ACTTTCAAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8686640	WI_WGS_2_73923716	WI	MOUSE	f	SNP							C		G
ss38117842	NES09277703	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		G		C	C	G	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6280785					SNP	C	C	C	C	C	C	C	G	G	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117842	NES09277703	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72927758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559097	regulatory region 559097			1785 bp distal
Rr559098	regulatory region 559098			732 bp distal