rs6280198 SNP Detail

Summary

• ID
  rs6280198
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:124771777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCTGA CTCTGAGTTT
  CTGCTCTCTT GACTCAAATG TTCAGCCTGT GAGTCTGATG AGTTACAGGT ACAGTCAGGC
  AGAAACTGAT TTTTAATGAA TTATTGATGA TTGGTTTTAG AGAATTCTCC GATTATGAAT
  CTGAGTTTTT GAAAAACATT CAAGCAATCT CTATTTTCCT TATCCTTCTA CCACAACAGA
  M
  TGAAGGCAGA ACGGATTCTA TGGAAGCATC ATAATAATTT TACAAGTAGT TACCAGCTTT
  ATACGCATAC ACAGGGGCAA GGGTTCAGAG AGACGGAGAC AAACTAAAGA GCTGAGGTGG
  TGAGGGTCTC CCAGGCACTC GGCTAGACCA CTACATGTGG ATTGGTAGAT TAATCACTCT
  TCAAATTTCT TTCATCTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8686049	WI_WGS_2_125915955	WI	MOUSE	f	SNP							C		A
ss37637060	NES09007635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6280198					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37637060	NES09007635	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124771777 () rs orientation: forward

Symbol	Name	Function Class
Rr564149	regulatory region 564149	1075 bp distal
Rr564150	regulatory region 564150	1175 bp distal