rs6279685 SNP Detail

Summary

• ID
  rs6279685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:124771686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGATATT AAGAGCTCAT
  CTATACACAC ACACACACAC AGAGAGAGAA AGGGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGGCTG ACTCTGAGTT TCTGCTCTCT TGACTCAAAT GTTCAGCCTG
  TGAGTCTGAT GAGTTACAGG TACAGTCAGG CAGAAACTGA TTTTTAATGA ATTATTGATG
  R
  TTGGTTTTAG AGAATTCTCC GATTATGAAT CTGAGTTTTT GAAAAACATT CAAGCAATCT
  CTATTTTCCT TATCCTTCTA CCACAACAGA CTGAAGGCAG AACGGATTCT ATGGAAGCAT
  CATAATAATT TTACAAGTAG TTACCAGCTT TATACGCATA CACAGGGGCA AGGGTTCAGA
  GAGACGGAGA CAAACTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8685533	WI_WGS_2_125915864	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6279685					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:124771686 () rs orientation: forward

Symbol	Name	Function Class
Rr564149	regulatory region 564149	984 bp distal
Rr564150	regulatory region 564150	1084 bp distal