TGCCT CCATTTCTCT TAAAACCACT Y GAGACTCTCA CCTGCTCCGT CCTTG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss8685014 | WI_WGS_1_157776362 | WI | MOUSE | f | SNP | T | C | |||||||||||
ss49721304 | NES13074197 | PERLEGEN | MM_PANEL2 | f | SNP | C | T | T | T | C | T | T | C | C | T | C | C | |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs6279170 | SNP | C | T | T | T | C | C | T | T | C | C | T | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49721304 | NES13074197 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr1:156487947 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr421219 | regulatory region 421219 | 1251 bp distal | ||||||
Rr421220 | regulatory region 421220 | within coordinates | ||||||
Rr421221 | regulatory region 421221 | 490 bp proximal | ||||||
Rr421222 | regulatory region 421222 | 1631 bp proximal | ||||||
Tor3a | torsin family 3, member A | Intron |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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