rs6278616 SNP Detail

Summary

• ID
  rs6278616
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:3603868 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TAAAAAGTCT GATTAGGATG
  ATCCCTTTCT TATTCTTTTT TAAGGTAAGG GGTCATGAAT GGTGAATGTT CATTCTGCTA
  TTTTCTCAGT GTTTAGGACT AAGCAAGTAC ATTTAGATGC TGTTATGTTA GTTGAGAGAT
  TCTGTTTTAA AAACCAATTT TCTATGGGGT ATGCTGGTGT GTTTGAGATT GAACCCAAGA
  S
  TTTCGATTTA AGCATGCTAA GCATGTACTC TATCTCTGAG CTACTTCTCT AACACTTTTA
  TAACTATGCC ATATTTGTAT TCTTTAGCTG TCACCACAGT TAGTAGTATT GAAAAAGAAG
  GTACGATTTA TAGTAGGGGC AAATTTTATG TTTATTGAGA AAAGTATTGA TTCTTTAAGG
  AATGATAGAT GATAATACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8684457	WI_WGS_19_7278426	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6278616					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3603868 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp6r3	protein phosphatase 6, regulatory subunit 3			Intron
				Noncoding-Transcript-Variant
Rr542430	regulatory region 542430			1845 bp distal
Tssr157396	transcription start site region 157396			1025 bp downstream