rs6278371 SNP Detail

Summary

• ID
  rs6278371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29866795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCGGGGC ATGGGACAGC
  AAAAACTGCA GGGGCCATTG ATCAGCCTCT CTGAGCCATC TCCCTCCTGG TCTGGTTCAG
  TTGCTTTCTC CTCAACTAAC TACTCTTTGC CTCCTGAGGT AGGCTTTAAG TTCCCAGTGG
  ATGTTTTTCT TCCCTCCCCT GTGAAATCAC ATGAATCTAG GCTGGGTGGG GGCAGGGGAG
  R
  AGTATGGTAG GCTCTGAACA AGCCCAACCT CACTGGTGGG AGAAATGGTC CCGTAAATCC
  TTTCAAAGGG CGCCCACCAT GTCTGAGAGT CGGAAGGGGC AGCCGGTGAC ATGAATACGA
  TTATTGTAAT GGAGCAAAAT GTGTGACCCG ACCGGATTCG GTAAACCCAG CAAAAGGGAA
  CGGCACAGTT AACCCGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8684212	WI_WGS_3_29624818	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6278371					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29866795 () rs orientation: forward

Symbol	Name	Function Class
Gm33206	predicted gene, 33206	within coordinates
Gm65557	predicted gene, 65557	within coordinates
Rr574687	regulatory region 574687	1 bp distal
Rr574688	regulatory region 574688	within coordinates
Rr574689	regulatory region 574689	435 bp proximal