rs6277809 SNP Detail

Summary

• ID
  rs6277809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89417070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCTCTTG TTGCGACTGA
  CTGGCCAGAC TAACAGATAT TTACTCTTCC TTTGTTTCTA CTGCTAGCAG TACCCAAATC
  AACTTCCTAA GCCCAAACTC AGGGTCTCTT GTTGGCTGCT CCTCCAACAG TAGTTTTGCT
  CAGCTGAGGA TGGAGTGCCA GGCAGCCTGA ACCTCTCCAC AGGCATGGGG AAGTTGATGA
  Y
  CTGTCTGACC CTTGTCAGGA GATGCCGAAG CCGCCCCATC CCCACCCCCA CCACAGTCAA
  GGCTTCCATT GCTGGAGGTG GCTACACTAG ACAACTGATG GTGGATACTG GGAGCTGCTG
  GCCAGGATTT GCCCTGCTTT CTTTCCTTGC CCTTTCTCCG GCCCCCTTGG CTCAGATGGA
  AAAGGCAAGA TGCAACAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8683646	WI_WGS_3_90355484	WI	MOUSE	f	SNP							C		T
ss46751120	NES10748030	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6277809					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46751120	NES10748030	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89417070 () rs orientation: forward

Symbol	Name	Function Class
Rr580122	regulatory region 580122	994 bp proximal
Rr580123	regulatory region 580123	1218 bp proximal
Rr580124	regulatory region 580124	1396 bp proximal