rs6277343 SNP Detail

Summary

• ID
  rs6277343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29794429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAGTAG CTATAGTCAA
  TATTATAAGC CATGCCCATG CTCCAAACAG AAGTTCTCAC CGGTTTACAC TCCTCCTAGG
  AGTGTGGGTG AGGTTGGACC TTTGAGACCT GAAAAACATG GAGCCTGTTA AACTATCACT
  GTACTGGTTC TGAAAGTTCC TAAACCTTCA GAAATTAACA ACTACTGAAC TTGCTATTCT
  R
  GATAATTGTG TTAACTTGCA AAAAAAAAAA TTTTGTTTTA CAAATTTTAC CATATCATGC
  AAGTAGGATG ACTAAAAATA TTCCGTCAGG CAAAGGACCT GACTGCTGTA AGCCAGTAAT
  AATCCACCCA TGTGTGTATC TAAGCAAATG CTCACCGTGT TCCCTAACAC CATCAGCTAA
  AAGTGTTTAT TGTAAAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8683177	WI_WGS_3_29552432	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6277343					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29794429 () rs orientation: forward

Symbol	Name	Function Class
Gm65548	predicted gene, 65548	within coordinates
Rr574683	regulatory region 574683	696 bp distal
Rr574684	regulatory region 574684	770 bp distal