rs6276432 SNP Detail

Summary

• ID
  rs6276432
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29866447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT GCTAGAAAAC CAGGACCCCA
  W
  GACCCTTTGA GAGGCCAGGA TGCGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8682261	WI_WGS_3_29624470	WI	MOUSE	f	SNP						A		T
ss45420119	mCV24264008	ABI	CRAMUS_MOUSE	f	SNP		A	T			A
ss46883773	NES10829726	PERLEGEN	MM_PANEL2	f	SNP	A			A	T		T		A		A	A		T
ss320693149	CHEV_3_29711220	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6276432					SNP	A	A	T	A	T	A	T	T	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46883773	NES10829726	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29866447 () rs orientation: forward

Symbol	Name	Function Class
Gm33206	predicted gene, 33206	within coordinates
Gm65557	predicted gene, 65557	337 bp upstream
Rr574687	regulatory region 574687	247 bp proximal
Rr574688	regulatory region 574688	348 bp proximal
Rr574689	regulatory region 574689	783 bp proximal