rs6275908 SNP Detail

Summary

• ID
  rs6275908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29866340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCTATAG TGATAGGTGA
  TGTGTGATTC ATTTGGGGGA AGATAAACAT TTTCTATTCA GACTTTGAAT ACCTGGGCCT
  ACGGTTAGCT AATCAAGTCT CTGCATGGCT GAACAGACAT CTTCAAAGGG ACTTTACTCT
  AAATTACTCC ATTGTGTGTT TCTAGATGCT GTCCTGTTGC ATATTGATAA TATTTCTTAT
  R
  GCCACTGCTT AAAAGTAGGA AACAAACATA ATTTAGACTT TACTCATCTT AAAAGAAAGC
  CAGTGGTGTT ATAAACCTAA GTCCATGCTA GAAAACCAGG ACCCCAAGAC CCTTTGAGAG
  GCCAGGATGC GCTCACAATA AGTTACATCT GTCTGTAACG TAAGGCACAC AAAGAGAGAC
  TCAGAGAGTG TGCCTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8681735	WI_WGS_3_29624363	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6275908					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29866340 () rs orientation: forward

Symbol	Name	Function Class
Gm33206	predicted gene, 33206	within coordinates
Gm65557	predicted gene, 65557	444 bp upstream
Rr574687	regulatory region 574687	354 bp proximal
Rr574688	regulatory region 574688	455 bp proximal
Rr574689	regulatory region 574689	890 bp proximal