rs6275877 SNP Detail

Summary

• ID
  rs6275877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29866323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCATACA GTTTGGCAAC
  TCTATAGTGA TAGGTGATGT GTGATTCATT TGGGGGAAGA TAAACATTTT CTATTCAGAC
  TTTGAATACC TGGGCCTACG GTTAGCTAAT CAAGTCTCTG CATGGCTGAA CAGACATCTT
  CAAAGGGACT TTACTCTAAA TTACTCCATT GTGTGTTTCT AGATGCTGTC CTGTTGCATA
  Y
  TGATAATATT TCTTATAGCC ACTGCTTAAA AGTAGGAAAC AAACATAATT TAGACTTTAC
  TCATCTTAAA AGAAAGCCAG TGGTGTTATA AACCTAAGTC CATGCTAGAA AACCAGGACC
  CCAAGACCCT TTGAGAGGCC AGGATGCGCT CACAATAAGT TACATCTGTC TGTAACGTAA
  GGCACACAAA GAGAGACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8681704	WI_WGS_3_29624346	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6275877					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29866323 () rs orientation: forward

Symbol	Name	Function Class
Gm33206	predicted gene, 33206	within coordinates
Gm65557	predicted gene, 65557	461 bp upstream
Rr574687	regulatory region 574687	371 bp proximal
Rr574688	regulatory region 574688	472 bp proximal
Rr574689	regulatory region 574689	907 bp proximal