rs6275652 SNP Detail

Summary

• ID
  rs6275652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69554996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATAT CAAAAATTGT
  ATTTTTTATT TCTGTAGGCC AAAATTTGGA CCTTGAGATG TGCAGGCAGT ACTTCAAATA
  TTCAGAGAAG ACTGCTATAA TTGGACCTTT GACTTTTACT GACAAGGCGC ATTTTTTGCT
  TTGTTTGAGG TCTTTGGCAT TTTTAGGGCA AGCACCACTG AGCTGTATTC CTAACCATTG
  R
  TCTCCACATT TGTTTGTGTG CATAGATTCA AGACTTCACA ACTGAGGGCA AGTGCTAGAT
  CACTGGACCA CAAACTAACT CCTAAGTTTT CAGAATACCT GTTAGGTGGT GTTTTTCTAC
  CAGCTCATTT TTTGCATACC AGTAGTTTGT GTATATCAAA AACATTAAAG AAAATGGTTC
  TATTTGGAAG AGCATAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8681479	WI_WGS_2_70502283	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6275652					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69554996 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11715	CpG island 11715			908 bp distal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)			Intron
				Noncoding-Transcript-Variant
Rr397018	regulatory region 397018			1745 bp downstream
Rr558457	regulatory region 558457			1549 bp distal
Rr558458	regulatory region 558458			1858 bp distal
Rr558459	regulatory region 558459			837 bp distal
Tssr18132	transcription start site region 18132			1812 bp downstream
Tssr18133	transcription start site region 18133			1776 bp downstream
Tssr18134	transcription start site region 18134			1584 bp downstream
Tssr18135	transcription start site region 18135			1559 bp downstream
Tssr18136	transcription start site region 18136			1374 bp downstream
Tssr24445	transcription start site region 24445			1869 bp upstream