rs6275559 SNP Detail

Summary

• ID
  rs6275559
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69554948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAT TTTTTGCTTT GTTTGAGGTC
  K
  TTGGCATTTT TAGGGCAAGC ACCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8681386	WI_WGS_2_70502235	WI	MOUSE	f	SNP			T	G
ss45283704	mCV25080454	ABI	CRAMUS_MOUSE	f	SNP	G	G	T		G
ss146730117	ENSMUSSNP20100	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				G
ss320332115	CHEV_2_69562661	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6275559					SNP	G	G	T	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69554948 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11715	CpG island 11715			860 bp distal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)			Intron
				Noncoding-Transcript-Variant
Rr397018	regulatory region 397018			1697 bp downstream
Rr558457	regulatory region 558457			1501 bp distal
Rr558458	regulatory region 558458			1810 bp distal
Rr558459	regulatory region 558459			789 bp distal
Tssr18132	transcription start site region 18132			1764 bp downstream
Tssr18133	transcription start site region 18133			1728 bp downstream
Tssr18134	transcription start site region 18134			1536 bp downstream
Tssr18135	transcription start site region 18135			1511 bp downstream
Tssr18136	transcription start site region 18136			1326 bp downstream
Tssr24445	transcription start site region 24445			1821 bp upstream