rs6275537 SNP Detail

Summary

• ID
  rs6275537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69554924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATTGGG TTGTTCTGCT
  CACTCCCTAA GTAGGTTGGT GTGTGTGTAT GTATGTGTGT GTGTGTGTGT ATATATATAT
  ATCAAAAATT GTATTTTTTA TTTCTGTAGG CCAAAATTTG GACCTTGAGA TGTGCAGGCA
  GTACTTCAAA TATTCAGAGA AGACTGCTAT AATTGGACCT TTGACTTTTA CTGACAAGGC
  R
  CATTTTTTGC TTTGTTTGAG GTCTTTGGCA TTTTTAGGGC AAGCACCACT GAGCTGTATT
  CCTAACCATT GGTCTCCACA TTTGTTTGTG TGCATAGATT CAAGACTTCA CAACTGAGGG
  CAAGTGCTAG ATCACTGGAC CACAAACTAA CTCCTAAGTT TTCAGAATAC CTGTTAGGTG
  GTGTTTTTCT ACCAGCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8681364	WI_WGS_2_70502211	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6275537					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69554924 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11715	CpG island 11715			836 bp distal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)			Intron
				Noncoding-Transcript-Variant
Rr397018	regulatory region 397018			1673 bp downstream
Rr558457	regulatory region 558457			1477 bp distal
Rr558458	regulatory region 558458			1786 bp distal
Rr558459	regulatory region 558459			765 bp distal
Tssr18132	transcription start site region 18132			1740 bp downstream
Tssr18133	transcription start site region 18133			1704 bp downstream
Tssr18134	transcription start site region 18134			1512 bp downstream
Tssr18135	transcription start site region 18135			1487 bp downstream
Tssr18136	transcription start site region 18136			1302 bp downstream
Tssr24445	transcription start site region 24445			1797 bp upstream