rs6274093 SNP Detail

Summary

• ID
  rs6274093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63541248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGCACTG GGCAGGTGCC
  TGGATGCTGT AGTAACAACT CCACAGAAGG GGAGTGGTGG CAATGTGTAA AAACAAGTGA
  CATTTCTTCC CAACCCATCT TCCAGAAAAA GAGGAATTGA TTCCTGATGG ATTCCTAGAA
  ATTTCCTCAC CCTATGGGGT GGGCTTTCAG TTCCCCACTT GGAACATCTT GGTGCTATTT
  R
  GGGGAGTCAC GTTAGGTGAA ACCCCTCTAT CAGCATTGTC TTTGGATGCA TGTAGAGGTC
  ATGGTATAAC AGAAGATGGA AACAAATGGA AGTCAGTGCT GGACTTATGT GCTGGTGGGT
  GATGGGGGTT AAGCAACTTT AAAAGTACCA GTGGCAAGTA GCACTCACTG CTTCTTCATA
  GGAGCACTGA AGAGTCTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8679917	WI_WGS_4_60902393	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6274093					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63541248 () rs orientation: forward

Symbol	Name	Function Class
Rr593585	regulatory region 593585	276 bp distal
Rr593586	regulatory region 593586	358 bp distal
Tex48	testis expressed 48	583 bp upstream
Tssr42062	transcription start site region 42062	594 bp upstream
Tssr42063	transcription start site region 42063	563 bp upstream