rs6273594 SNP Detail

Summary

• ID
  rs6273594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146606221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACAACTC CAGTTCCAGA
  GGATCTGATG CCCCCTTCTG GCCTATTCTG GCGCCAGGCA CATACATGGT GCACAGACAA
  AATGTGCATA TATGTTTAGT TAGTAAAGTT TAAAAAAAAC ATTATCTTTA ATAATATTTT
  AAAAAATCAT TCTTCATTTT CATTTTTATT GGGAATTGAT TGATAAGTAT AAAATACATA
  R
  CATTTTGGAT AACTCAAAAA GAAAACTTTT TTTCAGGCCT ATCTACTTCT ACAAATTTGT
  AATCCTAGCT ACTTTGGAAG ATGAGACAAG AGAATTGAGA GTTCAAGGCC TGCCTGGGCA
  ACTAATGAGC CTTGTTTTAA AATACAAACT ACAAAGCAGG CAGTGGGTGT ATGCTCAGTG
  GTGGAACATT TGCACACGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss8679418	WI_WGS_3_147436942	WI	MOUSE	f	SNP					G		A
ss61097365	NES16605565	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		A		G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs6273594					SNP	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097365	NES16605565	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146606221 () rs orientation: forward

Symbol	Name	Function Class
Rr587102	regulatory region 587102	155 bp distal
Tssr1089	transcription start site region 1089	954 bp downstream
Tssr32371	transcription start site region 32371	1274 bp downstream
Ttll7	tubulin tyrosine ligase-like family, member 7	Intron