rs6273255 SNP Detail

Summary

• ID
  rs6273255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52551201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGGAA CCCCGCAAAC
  AGACTCAGGG GCCCAGAACA CACAGCGAAG AACCCAGGTG ACTCGTGGTA AGCATCTTTG
  CTGCACTGGC CACAGGGAAA TCTGCGCAAC AGAACATTTC CCCTTGATAT TTGTGCTTTG
  TACAAGAATT AAGTCTCAAG ACACTTAGGG GGAAACTCAT CTCCACTCCT TTTGTAACCT
  Y
  TTGGGCTAAG TGCAGAATCC ACAAAAGGCC CCCTTTTACC TTTTGAACGC TGAGTTTCAA
  ATCCCATTGA AGAAACCTGG CCCATGTTAT TTACTTTTTA AATAGCTTAA CAGATGGCCC
  AAGAGAGAGG CTTCCTGCCC CAAGTGAGCA CTGAGTAGTG TTTTGGTGTG CACCTTCAGC
  TTCAGAGCAG AGCTTGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8679079	WI_WGS_3_53100526	WI	MOUSE	f	SNP							C		T
ss46929035	NES10804623	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6273255					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46929035	NES10804623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52551201 () rs orientation: forward

Symbol	Name	Function Class
Gm65195	predicted gene, 65195	1383 bp upstream
Gm65199	predicted gene, 65199	480 bp downstream
Gm65200	predicted gene, 65200	within coordinates
Rr576559	regulatory region 576559	1989 bp distal
Rr576560	regulatory region 576560	1612 bp distal
Rr576561	regulatory region 576561	within coordinates
Rr576562	regulatory region 576562	269 bp proximal
Rr576563	regulatory region 576563	612 bp proximal