rs6273235 SNP Detail

Summary

• ID
  rs6273235
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:15531025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTATGTC CAAGGTCCTG
  AGTTGATTGC AACCTGGGAG GAACATAATT TTATTCAGTG GTTCTAAAAA TCTGGTCTGA
  TAGTAATGCC CTAAATATAC ATGTGAGGGG TTACATAGGA ATAAAGATAG AAAGTCCATA
  TATTGCCCCA GTACAGGGGA ATGACAGGGC CAAAATATGG GAATGGGTGG GCAGGGGAGT
  S
  GGGGGGAGGA CTTTTGGGAT AGCATTGGAA ATGTAATTGA AGAAAATACA TTTAAAAAAA
  AAAGAAAGTC CATATATTAG TTACAACTTT ATTACAGTCC GCCATTTGTG TATTTGCTCT
  TTGTTTTTGA CTTTTTCTTT CAGTAGATAA CAAGGTCATA AAACTATACA CAGCGTTATA
  AACAGCCATG TTCAGCTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8679059	WI_WGS_2_15652807	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6273235					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:15531025 () rs orientation: forward

Symbol	Name	Function Class
Malrd1	MAM and LDL receptor class A domain containing 1	265 bp upstream
Rr552160	regulatory region 552160	within coordinates
Tssr16295	transcription start site region 16295	257 bp upstream
Tssr16296	transcription start site region 16296	313 bp upstream
Tssr16297	transcription start site region 16297	485 bp upstream