rs6272194 SNP Detail

Summary

• ID
  rs6272194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150684776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTTTCT ATATTTTTTA
  AAGACTCCCT ACAGATTTAC TAGCTGTTCT TGCCCATTCT CATGAAGATC ATAACTCTGT
  GAGGTGGTGG TGCACACCTT TAATCCCAGC ACTCAGGAGG CAGAGGCAGA TGGATCTCCA
  AGTTTGAGGC CAGCCTGGTC TATAGACCAG GCAGTTCCAG GGCAGTCAGG GATACACAGA
  R
  AAACCTTGTC TTGAAAAAAA CAAAACAAAA CAAAACAAAA CAAAAACCAA AATAAAACCC
  AAAATACCAA CCCAAACCAA TCATTACTCA TGTACAGTGC ACTATACACT GGCTTGGGAA
  TGCCTAGAAC CGTGAAAGAG ACTTCCATGC CACCACTGTC ACCTACAGGC ACTTAGCACT
  GCACCTTCAG GAAGACAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8678016	WI_WGS_2_151849252	WI	MOUSE	f	SNP			A	G
ss147951589	ENSMUSSNP3629209	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6272194					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150684776 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd12	abhydrolase domain containing 12			Intron
				Noncoding-Transcript-Variant
Rr567117	regulatory region 567117			307 bp distal
Rr567118	regulatory region 567118			1965 bp proximal
Tssr26717	transcription start site region 26717			469 bp upstream
Tssr26718	transcription start site region 26718			447 bp upstream