rs6272174 SNP Detail

Summary

• ID
  rs6272174
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150684767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTTGTTG AATTTTTCTA
  TATTTTTTAA AGACTCCCTA CAGATTTACT AGCTGTTCTT GCCCATTCTC ATGAAGATCA
  TAACTCTGTG AGGTGGTGGT GCACACCTTT AATCCCAGCA CTCAGGAGGC AGAGGCAGAT
  GGATCTCCAA GTTTGAGGCC AGCCTGGTCT ATAGACCAGG CAGTTCCAGG GCAGTCAGGG
  W
  TACACAGAAA AACCTTGTCT TGAAAAAAAC AAAACAAAAC AAAACAAAAC AAAAACCAAA
  ATAAAACCCA AAATACCAAC CCAAACCAAT CATTACTCAT GTACAGTGCA CTATACACTG
  GCTTGGGAAT GCCTAGAACC GTGAAAGAGA CTTCCATGCC ACCACTGTCA CCTACAGGCA
  CTTAGCACTG CACCTTCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8677996	WI_WGS_2_151849243	WI	MOUSE	f	SNP			A	T
ss147951584	ENSMUSSNP2689534	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6272174					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150684767 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd12	abhydrolase domain containing 12			Intron
				Noncoding-Transcript-Variant
Rr567117	regulatory region 567117			298 bp distal
Rr567118	regulatory region 567118			1974 bp proximal
Tssr26717	transcription start site region 26717			460 bp upstream
Tssr26718	transcription start site region 26718			438 bp upstream