rs6271683 SNP Detail

Summary

• ID
  rs6271683
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:15530809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTAGAA ACAAATAGTA
  ATATCCTCAT CAATGGGCTA TGTGAATTCA AATTCCTGAC CACAAACTTA TCTATATCTT
  CTACTATACT CTTAGAGTTT GGGAGGGTGA AGCAGATGGA TTAGGAATGC AAGCCTAGTC
  TAGGCTATGT AGGGAGAATA TCTTTTGAAA AAAAGCAAAA TAAAATGAAA TACACATATT
  M
  ATGGTAGAAA TGTGTTTAGT ATGTCCAAGG TCCTGAGTTG ATTGCAACCT GGGAGGAACA
  TAATTTTATT CAGTGGTTCT AAAAATCTGG TCTGATAGTA ATGCCCTAAA TATACATGTG
  AGGGGTTACA TAGGAATAAA GATAGAAAGT CCATATATTG CCCCAGTACA GGGGAATGAC
  AGGGCCAAAA TATGGGAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8677505	WI_WGS_2_15652591	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6271683					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:15530809 () rs orientation: forward

Symbol	Name	Function Class
Malrd1	MAM and LDL receptor class A domain containing 1	481 bp upstream
Rr552160	regulatory region 552160	within coordinates
Tssr16295	transcription start site region 16295	473 bp upstream
Tssr16296	transcription start site region 16296	529 bp upstream
Tssr16297	transcription start site region 16297	701 bp upstream