rs6271439 SNP Detail

Summary

• ID
  rs6271439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4813200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTCCAT ATAATTTTAA
  AACTAGATTT CCTCTTTTGT CACTTATTCT TTATACAGAC TTAATCACAT TTCAACCTCT
  AGGGGAAATG CTAAATGAAG CAATAATTAC TTTGTTCTTC TCAATTCTTC TGCCACCCTC
  GGCTTTTCTG ATGCTGGAGA TTGCTGGTCT CGAAGTTAAA AAGCAGAGCT ACATAGGTAA
  R
  ATGTCCCACC CCAAGAAAAT GATTTGGGTC TTTTAGATGC CCTAAGTGAA AATACAAAGA
  ATGGGTTAAT GCAGGGCTGG GGAGTAGAAT TTCTCCCTTC AAAAAGTATC TGCAATAAGA
  TGCTTACGTC TGGCCGGTTT CCACACTGCT GACCCTCTTC CTGTCAGAGG GCTGTGTCCA
  TTCCCTGGTG CCCTATCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8677260	WI_WGS_6_4519012	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6271439					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4813200 () rs orientation: forward

Symbol	Name	Function Class
Gm20714	predicted gene 20714	within coordinates
Rr626062	regulatory region 626062	1425 bp distal
Rr626063	regulatory region 626063	within coordinates