rs6270980 SNP Detail

Summary

• ID
  rs6270980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:15530633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACCTGC CTTTTAAGTG
  CTAAAATTAA AGGCATGTGC TACTACCACG TAACGATTCT TTATCTACTG TCGGTGTATC
  AGCTACTTCC GTATACTGTT AATTCTGAGT ACTTGTGCCA TGTCACATGC TTTATTTGTA
  AAAGTTAATT AAGGTGTATG GACAAGTGAT ATGCTACACA GTAGAAACAA ATAGTAATAT
  S
  CTCATCAATG GGCTATGTGA ATTCAAATTC CTGACCACAA ACTTATCTAT ATCTTCTACT
  ATACTCTTAG AGTTTGGGAG GGTGAAGCAG ATGGATTAGG AATGCAAGCC TAGTCTAGGC
  TATGTAGGGA GAATATCTTT TGAAAAAAAG CAAAATAAAA TGAAATACAC ATATTCATGG
  TAGAAATGTG TTTAGTATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8676801	WI_WGS_2_15652415	WI	MOUSE	f	SNP							C		G
ss37351064	NES08813147	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		G		C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6270980					SNP	C	C	C	C	C	C	C	G	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37351064	NES08813147	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:15530633 () rs orientation: forward

Symbol	Name	Function Class
Malrd1	MAM and LDL receptor class A domain containing 1	657 bp upstream
Rr552160	regulatory region 552160	167 bp proximal
Tssr16295	transcription start site region 16295	649 bp upstream
Tssr16296	transcription start site region 16296	705 bp upstream
Tssr16297	transcription start site region 16297	877 bp upstream