rs6269465 SNP Detail

Summary

• ID
  rs6269465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147953325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTTTCA ATATGGAAAG
  GAGGGGCTAA TGGGACCTCA TTGCTGATTG GTTAACTGTT AATGCTAATT CTACCAATTC
  AAATTGAGGA CAGGCTCTGG TTGGTCAGTA GTACTCGGTT ACGCAATTTC CGGATGTAAA
  GTCTCTAATG GCAGTGGATA GGTGGGGCTA GAGACTCCGG CAACTTTGAC CTTTTCACGC
  R
  GACCCCACAC TAGCAACTCC CCAGAGTGCT TTTGCCAGGG ACGAACTGGA ATTTGGATCC
  GAGGCTTGTA GGACGCAGTA GCCGAGTTCT AGGGAAACAA AAGTCTGAAG ATGAATTTCC
  CACGTGCGCT TGCTGGTTTC TCGAGCTGGC TCTTCAAACC TGAACTTGCC GAGGACTCTC
  CGGATAATGA CTCTCCGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8675283	WI_WGS_4_143227804	WI	MOUSE	f	SNP			G	A
ss45691829	mCV24933386	ABI	CRAMUS_MOUSE	f	SNP	A	A	G		G
ss147985381	ENSMUSSNP4470967	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
ss321415393	CHEV_4_147242977	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6269465					SNP	A	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147953325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15282	CpG island 15282	within coordinates
Fv1	Friend virus susceptibility 1	111 bp upstream
Miip	migration and invasion inhibitory protein	149 bp upstream
Rr398850	regulatory region 398850	within coordinates
Rr604509	regulatory region 604509	1700 bp distal
Rr604510	regulatory region 604510	396 bp distal
Rr604511	regulatory region 604511	783 bp distal
Rr604512	regulatory region 604512	within coordinates
Tssr40232	transcription start site region 40232	43 bp downstream
Tssr40233	transcription start site region 40233	within coordinates
Tssr44551	transcription start site region 44551	317 bp upstream
Tssr44552	transcription start site region 44552	246 bp upstream
Tssr44553	transcription start site region 44553	173 bp upstream