rs6269355 SNP Detail

Summary

• ID
  rs6269355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24605949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGTTT GGGAGGTATG
  AAGGTATGAG ACAGGTTCGG GAAAAGTTCC CCATGTGACC ATTTCCTGGA TTCAATGACA
  TTCAAGTCAG ACGTCAGCGG GGGCTCCTGT GTTCTCCTAA GTCCAATGGG CAGCCATAAG
  CCAGTCTAAT CAAAGTATCA ATCAATGGTT TCTGGAAAGG ATAACGGGGG ATGCTAGGAC
  R
  TTTTGTAGTT GGAACACATG TATGCGCAGG AGATGATGGA AGGTAAAGAT GAAGTTATCC
  TGGTGCGGAT GCTGAAGAAC TTGCAGCTCT CCCCTGGGAC TCTCCTTGAA CACGCATCAT
  CTGACCTTTA ATTTATTAAT TTATTTTTAA TACTTACATT CCCCTGGTTC TCCGTCCCAG
  CCTTTGCTTC CCCCATCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8675173	WI_WGS_6_24564759	WI	MOUSE	f	SNP		A	G
ss133080132	ENSMUSSNP283177	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6269355					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24605949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17203	CpG island 17203	1937 bp distal
Lmod2	leiomodin 2 (cardiac)	536 bp downstream
Rr627250	regulatory region 627250	666 bp proximal
Rr627251	regulatory region 627251	1523 bp proximal