rs6269301 SNP Detail

Summary

• ID
  rs6269301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24605908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTACTT ACTAGAAGAC
  TAAATTAAAG AACTTTCTGG ACAGGCTGTT TGGGAGGTAT GAAGGTATGA GACAGGTTCG
  GGAAAAGTTC CCCATGTGAC CATTTCCTGG ATTCAATGAC ATTCAAGTCA GACGTCAGCG
  GGGGCTCCTG TGTTCTCCTA AGTCCAATGG GCAGCCATAA GCCAGTCTAA TCAAAGTATC
  R
  ATCAATGGTT TCTGGAAAGG ATAACGGGGG ATGCTAGGAC ATTTTGTAGT TGGAACACAT
  GTATGCGCAG GAGATGATGG AAGGTAAAGA TGAAGTTATC CTGGTGCGGA TGCTGAAGAA
  CTTGCAGCTC TCCCCTGGGA CTCTCCTTGA ACACGCATCA TCTGACCTTT AATTTATTAA
  TTTATTTTTA ATACTTACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8675119	WI_WGS_6_24564718	WI	MOUSE	f	SNP			A	G
ss133080129	ENSMUSSNP6210219	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6269301					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24605908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17203	CpG island 17203	1896 bp distal
Lmod2	leiomodin 2 (cardiac)	495 bp downstream
Rr627250	regulatory region 627250	707 bp proximal
Rr627251	regulatory region 627251	1564 bp proximal