rs6268960 SNP Detail

Summary

• ID
  rs6268960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108063444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTCTtttaag
  tttgttttat gtgtatgggt gttttgcctg catgtatgta tgtgtattgc ctgtgtgctg
  gccacagagg tcagaagagg atgttaggtc cctgaaactg gagttatgga tggaagtgag
  ttaccatatg ggtgctggga accaaacctg agtcctctgc aagaaacaca aatgctgagc
  tgactctcca gctccAAGGT AGCCATATCC CTCCCtccct ccctccctcc ctccctccct
  Y
  ccttcctgnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnct ccctccctct
  ctccctccct ccctccctcc ccttctccct ccctcccTTC CTTCTTTCCT TCTTCCtttt
  tttaaggttt ttcaagacag ggtttctctt tgtaaccatg gctgtatcca tgatctcatt
  ctgtaggcca                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8674777	WI_WGS_3_108647883	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6268960					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108063444 () rs orientation: forward

Symbol	Name	Function Class
Gpr61	G protein-coupled receptor 61	1226 bp upstream
Rr583152	regulatory region 583152	1257 bp distal
Rr583153	regulatory region 583153	1091 bp distal
Rr583154	regulatory region 583154	1403 bp proximal
Tssr35129	transcription start site region 35129	1220 bp upstream