rs6268824 SNP Detail

Summary

• ID
  rs6268824
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24605830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATGTTCT CACACCGAAA
  AGGTCCATGC CTTTAAGCAT TGGCTTTCTT TCCTCACGTC CAAGAAATTC TGGCCAAATC
  TCCTACTTAC TAGAAGACTA AATTAAAGAA CTTTCTGGAC AGGCTGTTTG GGAGGTATGA
  AGGTATGAGA CAGGTTCGGG AAAAGTTCCC CATGTGACCA TTTCCTGGAT TCAATGACAT
  K
  CAAGTCAGAC GTCAGCGGGG GCTCCTGTGT TCTCCTAAGT CCAATGGGCA GCCATAAGCC
  AGTCTAATCA AAGTATCAAT CAATGGTTTC TGGAAAGGAT AACGGGGGAT GCTAGGACAT
  TTTGTAGTTG GAACACATGT ATGCGCAGGA GATGATGGAA GGTAAAGATG AAGTTATCCT
  GGTGCGGATG CTGAAGAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8674641	WI_WGS_6_24564640	WI	MOUSE	f	SNP			T	G
ss133080127	ENSMUSSNP6415816	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6268824					SNP	T	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24605830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17203	CpG island 17203	1818 bp distal
Lmod2	leiomodin 2 (cardiac)	417 bp downstream
Rr627250	regulatory region 627250	785 bp proximal
Rr627251	regulatory region 627251	1642 bp proximal