rs6268441 SNP Detail

Summary

• ID
  rs6268441
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73070956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAAATATG TGGGGCTTGG AATTTTTTTC
  AGGCTCCTAA ATTTAACCCA CAAGAATTCT TTCCTAAATA CCACACCGCT CACTGCCCTC
  CAGAACAGGG GAATTTGCAT CTCAAATGTC CGGGGCCAGC ACCTTAAGTC TGAGTGCTCC
  M
  GTCTTCCTTG TGCATGACAG TTGCTCTGAG TTAAGTCTGA GTGCTCCCAT CTTCCTTGTG
  CATGACAGTT GGTCTGAGTT AAGTCTGAGT GCTCCCATCT TCCTTGTGCA TGACAGTTGG
  TCTGAGTTAA GTCTGAGTGC TCCCGTCTTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8674257	WI_WGS_7_62876044	WI	MOUSE	f	SNP	A	C
ss322260057	CHEV_7_80566094	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6268441					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73070956 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	1042 bp upstream
Rgma	repulsive guidance molecule family member A	1309 bp downstream
Rr648938	regulatory region 648938	1392 bp distal
Rr648939	regulatory region 648939	1512 bp distal
Rr648940	regulatory region 648940	within coordinates
Rr648941	regulatory region 648941	848 bp proximal
Rr648942	regulatory region 648942	1090 bp proximal
Rr648943	regulatory region 648943	1443 bp proximal
Tssr72937	transcription start site region 72937	1331 bp downstream