rs6268399 SNP Detail

Summary

• ID
  rs6268399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24605786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTTTTTTTCT
  TTCTTTTTTT AAAAGAGAAA CTAATATTTT TCTGTGAGTT AATATATCTG CTGGGTATGT
  GTAATATTGC TAAATATTAA AATCATTATG TTCTCACACC GAAAAGGTCC ATGCCTTTAA
  GCATTGGCTT TCTTTCCTCA CGTCCAAGAA ATTCTGGCCA AATCTCCTAC TTACTAGAAG
  ACTAAATTAA AGAACTTTCT GGACAGGCTG TTTGGGAGGT ATGAAGGTAT GAGACAGGTT
  Y
  GGGAAAAGTT CCCCATGTGA CCATTTCCTG GATTCAATGA CATNCAAGTC AGACGTCAGC
  GGGGGCTCCT GTGTTCTCCT AAGTCCAATG GGCAGCCATA AGCCAGTCTA ATCAAAGTAT
  CNATCAATGG TTTCTGGAAA GGATAACGGG GGATGCTAGG ACNTTTTGTA GTTGGAACAC
  ATGTATGCGC AGGAGATGAT GGAAGGTAAA GATGAAGTTA TCCTGGTGCG GATGCTGAAG
  AACTTGCAGC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8674215	WI_WGS_6_24564596	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6268399					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24605786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17203	CpG island 17203	1774 bp distal
Lmod2	leiomodin 2 (cardiac)	373 bp downstream
Rr627250	regulatory region 627250	829 bp proximal
Rr627251	regulatory region 627251	1686 bp proximal