rs6268398 SNP Detail

Summary

• ID
  rs6268398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73070927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGACTGT GGAAAAGCCA
  GGCCCAGGCA AAAAGTCCTT CACTCTCCAT CAGATGAAAG TGCCATGTGA CACTTGCCAA
  AAAAATATGT GGGGCTTGGA ATTTTTTTCA GGCTCCTAAA TTTAACCCAC AAGAATTCTT
  TCCTAAATAC CACACCGCTC ACTGCCCTCC AGAACAGGGG AATTTGCATC TCAAATGTCC
  R
  GGGCCAGCAC CTTAAGTCTG AGTGCTCCAG TCTTCCTTGT GCATGACAGT TGCTCTGAGT
  TAAGTCTGAG TGCTCCCATC TTCCTTGTGC ATGACAGTTG GTCTGAGTTA AGTCTGAGTG
  CTCCCATCTT CCTTGTGCAT GACAGTTGGT CTGAGTTAAG TCTGAGTGCT CCCGTCTTCC
  TTGTGCATGA CAGTTGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8674214	WI_WGS_7_62876015	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6268398					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73070927 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	1071 bp upstream
Rgma	repulsive guidance molecule family member A	1280 bp downstream
Rr648938	regulatory region 648938	1363 bp distal
Rr648939	regulatory region 648939	1483 bp distal
Rr648940	regulatory region 648940	within coordinates
Rr648941	regulatory region 648941	877 bp proximal
Rr648942	regulatory region 648942	1119 bp proximal
Rr648943	regulatory region 648943	1472 bp proximal
Tssr72937	transcription start site region 72937	1360 bp downstream