rs6268001 SNP Detail

Summary

• ID
  rs6268001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147953052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAT TGGCTAAGGC TGGGGCGGGG
  M
  CTCCGCCGCT GTCCTGCTCG GCCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8673816	WI_WGS_4_143227531	WI	MOUSE	f	SNP		C	A
ss147985371	ENSMUSSNP3504249	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss321415391	CHEV_4_147242704	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6268001					SNP	A	C	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147953052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15282	CpG island 15282			within coordinates
Fv1	Friend virus susceptibility 1			384 bp upstream
Miip	migration and invasion inhibitory protein			mRNA-UTR
				Noncoding-Transcript-Variant
Rr398850	regulatory region 398850			within coordinates
Rr604509	regulatory region 604509			1427 bp distal
Rr604510	regulatory region 604510			123 bp distal
Rr604511	regulatory region 604511			510 bp distal
Rr604512	regulatory region 604512			within coordinates
Tssr40232	transcription start site region 40232			192 bp upstream
Tssr40233	transcription start site region 40233			235 bp upstream
Tssr44551	transcription start site region 44551			44 bp upstream
Tssr44552	transcription start site region 44552			13 bp downstream
Tssr44553	transcription start site region 44553			36 bp downstream