rs6267954 SNP Detail

Summary

• ID
  rs6267954
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54631200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATTCTA CTCCAGCACC
  TAGGTGTGAA CCTGCCAGCT GTTTGCCTAT TTAAGTTTGC ATTTTAGTAG TATTGAGTAC
  ATTCACATCA TTGCACAAAG AATATTTTAT TGTGCAAAAT TGGAACTTTT CATTTGTTTT
  GTTTTGTTTT GTTTGAGACA GGGTTTCCTC TGTATAATAG CCCTGACTGT GCTAGAACTC
  M
  CTCTGTAGAC TAGGCTGGCT TCAAACTCAC AGAGATCAAC CTGTCTCTAC ACCCCACCCC
  ACCCCCACCC CACCAGTTCT GGTAAGGCAT GCGCCACCAC CCAGCTAAAT TGAAACTTTA
  TAAAGAGCTG ATAACTTCCT CAGCGCAAAC CCTGGCAGCC ATCATAGTGT GTGCTGTGCT
  TCTGATCTTA ATCATCCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8673769	WI_WGS_3_55191237	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6267954					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54631200 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			within coordinates
Rr397674	regulatory region 397674			462 bp upstream
Rr576833	regulatory region 576833			72 bp proximal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant