rs6267887 SNP Detail

Summary

• ID
  rs6267887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90757388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTTCTTTCAA
  AGTCCTTAGG TTTGACCTGT GTTTTGCTAG CAAAGCCCTT CAAACAAGCC CCCCCCCCCC
  CCCCTGTAAG AGTTCACTTC TGGAAGGTCC ACTCAGACAC AGACACTCTG TTCTGCCAAG
  GCTCTGATCA CATGCCTTCT ACAGCTGACA GAATCTGCTC CTCTTCTTCT CATGGTCTGA
  AGCTATAGAT AACTGAAAAA GTCTGTCTCA GAACAGAGAG ACCTGAGTTT TAATCCCCAG
  R
  CCACACGGAC ACAGCTCTGT GTTTGTGTCT CACTTATCTC AGCTTCACGA AGGGCTGTAC
  TGTTTTTTTT TTTTtggggg tgggggtggg ggtggggCTG AGATTAACAA CAGTATAATG
  CTCCACCCTC ATTCTAAGAC TCAAGCACAG GTGTTCCTGG GCACACAGGG CATTCGGTNC
  TGGAGGGACA CACATAACCT AAGAGACAAA AGTCTCTCCA GCTGTATGTA CTGTGTGTGC
  TGAGACCCTG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8673702	WI_WGS_6_91528957	WI	MOUSE	f	SNP							G		A
ss51360245	NES13739269	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6267887					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51360245	NES13739269	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90757388 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr1762	regulatory region 1762	89 bp upstream
Rr634323	regulatory region 634323	1171 bp distal
Tssr62048	transcription start site region 62048	876 bp downstream
Tssr62049	transcription start site region 62049	1618 bp downstream
Tssr62050	transcription start site region 62050	1631 bp downstream