rs6265232 SNP Detail

Summary

• ID
  rs6265232
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116261919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAAAAA AAAAAAAAAA
  AAAAACCCAG AGCAAGATGA TCTGATTTAT GGTGCATGAT AAACATATCC AAATTTGAGA
  AGAAATGTGG TGAGTTATTT TAATGCTAAA GGTATTCATT AAAATTACAT TTAAGTTGTC
  TGTCAGTCTC TGCATTTCCT CTTATTCTTA TATACCTTAT TCATTTCTTC ATATATCAAA
  K
  ATCTAAGAAC TGAGAAAGAT GGAGGATGGA TGGACAGAAA TACACAGAAA TAGACAGGCT
  AACATAAATG GATAGCATAT ATGCAAAGCA AAGGTTTAGA AAAATGTCCT AATAGTTTAC
  ACAGAATCAA ATGTTACACA CACACACACA TGAGCATGAC TTTATTATGA AATAGAGACA
  AGCATAATGG TCAGAAACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8671037	WI_WGS_4_114167264	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6265232					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116261919 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mast2	microtubule associated serine/threonine kinase 2			Intron
				Noncoding-Transcript-Variant
Rr597905	regulatory region 597905			1733 bp distal
Rr597906	regulatory region 597906			539 bp distal
Rr597907	regulatory region 597907			663 bp distal
Rr597908	regulatory region 597908			698 bp proximal
Tssr42878	transcription start site region 42878			198 bp upstream
Tssr42879	transcription start site region 42879			1386 bp downstream
Tssr42880	transcription start site region 42880			1412 bp downstream