rs6265203 SNP Detail

Summary

• ID
  rs6265203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116261902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTAGTTT GTTATTTACA
  AAAAAAAAAA AAAAAAAAAA AACCCAGAGC AAGATGATCT GATTTATGGT GCATGATAAA
  CATATCCAAA TTTGAGAAGA AATGTGGTGA GTTATTTTAA TGCTAAAGGT ATTCATTAAA
  ATTACATTTA AGTTGTCTGT CAGTCTCTGC ATTTCCTCTT ATTCTTATAT ACCTTATTCA
  Y
  TTCTTCATAT ATCAAATATC TAAGAACTGA GAAAGATGGA GGATGGATGG ACAGAAATAC
  ACAGAAATAG ACAGGCTAAC ATAAATGGAT AGCATATATG CAAAGCAAAG GTTTAGAAAA
  ATGTCCTAAT AGTTTACACA GAATCAAATG TTACACACAC ACACACATGA GCATGACTTT
  ATTATGAAAT AGAGACAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8671008	WI_WGS_4_114167247	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6265203					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116261902 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mast2	microtubule associated serine/threonine kinase 2			Intron
				Noncoding-Transcript-Variant
Rr597905	regulatory region 597905			1716 bp distal
Rr597906	regulatory region 597906			522 bp distal
Rr597907	regulatory region 597907			646 bp distal
Rr597908	regulatory region 597908			715 bp proximal
Tssr42878	transcription start site region 42878			181 bp upstream
Tssr42879	transcription start site region 42879			1403 bp downstream
Tssr42880	transcription start site region 42880			1429 bp downstream