CATAAGGTAG GTGAGCAGGC TCCCCAGAGA AAGCATTCCC TACCTAACCC AGTTTCTCCC NGCCCTGCCA GAGAGTAGGG AGGGGTGCAG GCTGGGTCCT AAAGTTACTT TGCCAGTCTA GGGTGATTGC ACAGTTCTTG TGGAAGGACA GGGGTGGCAG CGGCTGGTGA TAACAGTAAC GGGCTGTCCC TCCCACAGAG GCTGCCGTTG TAATCCCCGT GTGGCCGAAA CTCCNAGGAA GAAGAGCTGC R CCCACAGCCG GTCCTTGATC CCATCCAGGG TCTAGGTTCC GGCTGCCTTG GGCGCTGGCG TGAGGCCTAG GTTGCGAAGA AAACCGGGGC CAGGCTTGGC GAAGGCAGGC CAGGGAGTGG CCAGACCCAG GGCACAATGT CTCAGGCGGG GGGCAAGTCC CCTGCAAGTT CTGAAAAAGA CGTGGCATGC AAGCTGTGCC CCTGGGAAGA GGCTAGGCTG CTGGCTCAGT GGACGACGTG GGGCAGACCC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | C57BL/6J |
CZECHII/EiJ |
---|---|---|---|---|---|---|---|
ss8670903 | WI_WGS_11_60735943 | WI | MOUSE | f | SNP | G | A |
SNP Consensus Information | |||||||
SNP | Consensus Type | C57BL/6J |
CZECHII/EiJ |
||||
rs6265098 | SNP | G | A |
Location: Chr11:60088909 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi2979 | CpG island 2979 | 1740 bp proximal | ||||||
Rai1 | retinoic acid induced 1 | mRNA-UTR | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr448348 | regulatory region 448348 | 1108 bp distal | ||||||
Rr448349 | regulatory region 448349 | 16 bp proximal | ||||||
Rr448350 | regulatory region 448350 | 1740 bp proximal | ||||||
Rr448351 | regulatory region 448351 | 1977 bp proximal | ||||||
Srebf1 | sterol regulatory element binding transcription factor 1 | 1006 bp downstream | ||||||
Tssr108277 | transcription start site region 108277 | 1336 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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