rs6265098 SNP Detail

Summary

• ID
  rs6265098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60088909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CATAAGGTAG
  GTGAGCAGGC TCCCCAGAGA AAGCATTCCC TACCTAACCC AGTTTCTCCC NGCCCTGCCA
  GAGAGTAGGG AGGGGTGCAG GCTGGGTCCT AAAGTTACTT TGCCAGTCTA GGGTGATTGC
  ACAGTTCTTG TGGAAGGACA GGGGTGGCAG CGGCTGGTGA TAACAGTAAC GGGCTGTCCC
  TCCCACAGAG GCTGCCGTTG TAATCCCCGT GTGGCCGAAA CTCCNAGGAA GAAGAGCTGC
  R
  CCCACAGCCG GTCCTTGATC CCATCCAGGG TCTAGGTTCC GGCTGCCTTG GGCGCTGGCG
  TGAGGCCTAG GTTGCGAAGA AAACCGGGGC CAGGCTTGGC GAAGGCAGGC CAGGGAGTGG
  CCAGACCCAG GGCACAATGT CTCAGGCGGG GGGCAAGTCC CCTGCAAGTT CTGAAAAAGA
  CGTGGCATGC AAGCTGTGCC CCTGGGAAGA GGCTAGGCTG CTGGCTCAGT GGACGACGTG
  GGGCAGACCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8670903	WI_WGS_11_60735943	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6265098					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60088909 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2979	CpG island 2979			1740 bp proximal
Rai1	retinoic acid induced 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr448348	regulatory region 448348			1108 bp distal
Rr448349	regulatory region 448349			16 bp proximal
Rr448350	regulatory region 448350			1740 bp proximal
Rr448351	regulatory region 448351			1977 bp proximal
Srebf1	sterol regulatory element binding transcription factor 1			1006 bp downstream
Tssr108277	transcription start site region 108277			1336 bp downstream